Infectious Diseases
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Infectious Diseases
A curation of the best Articles and Research on Infectious Diseases. (Not a news site, focus on ideas, research, solutions, protocols and discussions related infectious/communicable/tropical diseases.
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Protective Behaviors and Secondary Harms Resulting From Nonpharmaceutical Interventions During the COVID-19 Epidemic in South Africa

Protective Behaviors and Secondary Harms Resulting From Nonpharmaceutical Interventions During the COVID-19 Epidemic in South Africa | Infectious Diseases | Scoop.it

Background: In March 2020, South Africa implemented strict nonpharmaceutical interventions (NPIs) to contain the spread of COVID-19. Over the subsequent 5 months, NPI policies were eased in stages according to a national strategy.

 

COVID-19 spread throughout the country heterogeneously; the case numbers peaked from July to August. A second COVID-19 wave began in late 2020. Data on the impact of NPI policies on social and economic well-being and access to health care are limited.


Objective: We aimed to determine how rural residents in three South African provinces changed their behaviors during the first COVID-19 epidemic wave.


Methods: The South African Population Research Infrastructure Network nodes in the Mpumalanga (Agincourt), KwaZulu-Natal, (Africa Health Research Institute) and Limpopo (Dikgale-Mamabolo-Mothiba) provinces conducted up to 14 rounds of longitudinal telephone surveys among randomly sampled households from rural and periurban surveillance populations every 2-3 weeks. Interviews included questions on the following topics: COVID-19–related knowledge and behaviors, the health and economic impacts of NPIs, and mental health. We analyzed how responses varied based on NPI stringency and household sociodemographics.


Conclusions: South Africans complied with stringent, COVID-19–related NPIs despite the threat of substantial social, economic, and health repercussions. Government-supported social welfare programs appeared to buffer interruptions in income and health care access during local outbreaks. Epidemic control policies must be balanced against the broader well-being of people in resource-limited settings and designed with parallel support systems when such policies threaten peoples’ income and access to basic services.

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An Agent-Based Model of the Local Spread of SARS-CoV-2: Modeling Study

An Agent-Based Model of the Local Spread of SARS-CoV-2: Modeling Study | Infectious Diseases | Scoop.it

The spread of SARS-CoV-2, originating in Wuhan, China, was classified as a pandemic by the World Health Organization on March 11, 2020.

 

The governments of affected countries have implemented various measures to limit the spread of the virus. The starting point of this paper is the different government approaches, in terms of promulgating new legislative regulations to limit the virus diffusion and to contain negative effects on the populations.

 

Objective: This paper aims to study how the spread of SARS-CoV-2 is linked to government policies and to analyze how different policies have produced different results on public health.


Methods: Considering the official data provided by 4 countries (Italy, Germany, Sweden, and Brazil) and from the measures implemented by each government, we built an agent-based model to study the effects that these measures will have over time on different variables such as the total number of COVID-19 cases, intensive care unit (ICU) bed occupancy rates, and recovery and case-fatality rates. The model we implemented provides the possibility of modifying some starting variables, and it was thus possible to study the effects that some policies (eg, keeping the national borders closed or increasing the ICU beds) would have had on the spread of the infection.


Conclusions: In line with what we expected, the obtained results showed that the countries that have taken restrictive measures in terms of limiting the population mobility have managed more successfully than others to contain the spread of COVID-19. Moreover, the model demonstrated that herd immunity cannot be reached even in countries that have relied on a strategy without strict containment measures.

 

read the study at https://medinform.jmir.org/2021/4/e24192

 

nrip's insight:

Yes, in line with what we expected. Govt's across the world need to capacity build to be ready for a possible future wave. Further, they should be proactive to predict one and act fast when it starts to come in. They come slow and then are everywhere all of a sudden.

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Ten scientific reasons in support of airborne transmission of SARS-CoV-2

Ten scientific reasons in support of airborne transmission of SARS-CoV-2 | Infectious Diseases | Scoop.it

The authors propose that it is a scientific error to use lack of direct evidence of SARS-CoV-2 in some air samples to cast doubt on airborne transmission while overlooking the quality and strength of the overall evidence base.

 

There is consistent, strong evidence that SARS-CoV-2 spreads by airborne transmission.

 

Although other routes can contribute, the authors believe that the airborne route is likely to be dominant. The public health community should act accordingly and without further delay.

 

Summary:

 

If an infectious virus spreads predominantly through large respiratory droplets that fall quickly, the key control measures are reducing direct contact, cleaning surfaces, physical barriers, physical distancing, use of masks within droplet distance, respiratory hygiene, and wearing high-grade protection only for so-called aerosol-generating health-care procedures.

 

Such policies need not distinguish between indoors and outdoors, since a gravity-driven mechanism for transmission would be similar for both settings.

 

But if an infectious virus is mainly airborne, an individual could potentially be infected when they inhale aerosols produced when an infected person exhales, speaks, shouts, sings, sneezes, or coughs.

 

Reducing airborne transmission of virus requires measures to avoid inhalation of infectious aerosols, including ventilation, air filtration, reducing crowding and time spent indoors, use of masks whenever indoors, attention to mask quality and fit, and higher-grade protection for health-care staff and front-line workers.

 

Airborne transmission of respiratory viruses is difficult to demonstrate directly.

 

Mixed findings from studies that seek to detect viable pathogen in air are therefore insufficient grounds for concluding that a pathogen is not airborne if the totality of scientific evidence indicates otherwise. Decades of painstaking research, which did not include capturing live pathogens in the air, showed that diseases once considered to be spread by droplets are airborne.

 

Ten streams of evidence collectively support the hypothesis that SARS-CoV-2 is transmitted primarily by the airborne route.

 
 
nrip's insight:

I have long held this unconventional view (along with my  view of mutations via energy transfer) which my friends and colleagues do not have a high opinion of that covid19 is mutating so as to make itself airborne if it is not already doing so. Its imperative we see this for what it is and not some wishy washy sci fi joke and let be it.

 

Defining a problem starts the process of solving it

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A Recursive Model of the Spread of COVID-19

A Recursive Model of the Spread of COVID-19 | Infectious Diseases | Scoop.it

The major medical and social challenge of the 21st century is COVID-19, caused by the novel coronavirus SARS-CoV-2.

 

Critical issues include the rate at which the coronavirus spreads and the effect of quarantine measures and population vaccination on this rate.

 

Knowledge of the laws of the spread of COVID-19 will enable assessment of the effectiveness and reasonableness of the quarantine measures used, as well as determination of the necessary level of vaccination needed to overcome this crisis.

 

Objective: This study aims to establish the laws of the spread of COVID-19 and to use them to develop a mathematical model to predict changes in the number of active cases over time, possible human losses, and the rate of recovery of patients, to make informed decisions about the number of necessary beds in hospitals, the introduction and type of quarantine measures, and the required threshold of vaccination of the population.

 

Methods: This study analyzed the onset of COVID-19 spread in countries such as China, Italy, Spain, the United States, the United Kingdom, Japan, France, and Germany based on publicly available statistical data. The change in the number of COVID-19 cases, deaths, and recovered persons over time was examined, considering the possible introduction of quarantine measures and isolation of infected people in these countries.

 

Based on the data, the virus transmissibility and the average duration of the disease at different stages were evaluated, and a model based on the principle of recursion was developed. Its key features are the separation of active (nonisolated) infected persons into a distinct category and the prediction of their number based on the average duration of the disease in the inactive phase and the concentration of these persons in the population in the preceding days.

 

Results: Specific values for SARS-CoV-2 transmissibility and COVID-19 duration were estimated for different countries. In China, the viral transmissibility was 3.12 before quarantine measures were implemented and 0.36 after these measures were lifted. For the other countries, the viral transmissibility was 2.28-2.76 initially, and it then decreased to 0.87-1.29 as a result of quarantine measures. Therefore, it can be expected that the spread of SARS-CoV-2 will be suppressed if 56%-64% of the total population becomes vaccinated or survives COVID-19.

 

Conclusions: The quarantine measures adopted in most countries are too weak compared to those previously used in China. Therefore, it is not expected that the spread of COVID-19 will stop and the disease will cease to exist naturally or owing to quarantine measures. Active vaccination of the population is needed to prevent the spread of COVID-19.

 

Furthermore, the required specific percentage of vaccinated individuals depends on the magnitude of viral transmissibility, which can be evaluated using the proposed model and statistical data for the country of interest.

 

read the entire paper at https://publichealth.jmir.org/2021/4/e21468/

 

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How SARS-CoV-2 first adapted in humans

How SARS-CoV-2 first adapted in humans | Infectious Diseases | Scoop.it

Viruses need entry proteins to penetrate the cells where they will replicate. The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) version is called the spike or S protein.

 

The S protein, also the target of the current vaccines, is quickly adapting to its new human hosts. It took its first major step in this direction early in 2020, when its amino acid 614 (of 1297) changed from an aspartic acid (D) to a glycine (G). Viruses bearing this D614G mutation transmit among humans more rapidly and now form the majority in circulation.

 

On page 525 of this issue, Zhang et al. (1) use careful structural analyses to reveal how D614G changed the S protein to accelerate the pandemic.

 

The work of Zhang et al. also reveals more about the natural history of the virus. The notable emergence of D614G suggests that the acquisition of a destabilizing furin site was a recent event. The virus could easily lose this site, as it does frequently in cell culture systems, implying that it in some way facilitates human transmission.

 

This is not a conclusion that most students of human coronaviruses would have anticipated, given that SARS-CoV-1, which transmits with reasonable efficiency, lacks this site, whereas the more distantly related MERS coronavirus bears this site and transmits poorly. How the SARS-CoV-2 furin site promotes new human infections remains a key open question in the field.

 

read the entire article at https://science.sciencemag.org/content/372/6541/466

 

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We know a lot about Covid-19. Experts have many more questions

We know a lot about Covid-19. Experts have many more questions | Infectious Diseases | Scoop.it

More than two dozen virologists, epidemiologists, and others responded to STAT's question about what they still most wanted to know.

 

In the 16 months since the SARS-CoV-2 virus burst into the global consciousness, we’ve learned much about this new health threat. People who contract the virus are infectious before they develop symptoms and are most infectious early in their illness. Getting the public to wear masks, even homemade ones, can reduce transmission. Vaccines can be developed, tested, and put into use within months. As they say, where there’s a will, there’s a way.

 

But many key questions about SARS-2 and the disease it causes, Covid-19, continue to bedevil scientists.

 

 

What accounts for the wide variety of human responses to this virus?

 

How much immunity is enough immunity?

 

How often will reinfections happen and what will they be like?

 

how long will immunity last?

 

How are viral variants going to impact the battle against Covid-19?

 

What is long Covid, who is at risk of developing it, and can it be prevented?

 

What’s the deal with Covid and kids?

 

 

How big a role do asymptomatically infected people actually play in SARS-2 transmission?

 

What does the future hold for SARS-2, evolutionarily and otherwise?

 

Can we figure out who might become a superspreader?

 

Can we learn more quicker from the study of the genetic sequences of SARS-2 viruses?

 

What is the impact of the nonpharmaceutical interventions?

 

What are the barriers to compliance of proven public health interventions and how can that problem best be addressed?

 

what are yhe differences between SARS-2 and its older cousin, SARS-1

 

Where did SARS-2 come from?

 

 

Read more at

https://www.statnews.com/2021/04/20/we-know-a-lot-about-covid-19-experts-have-many-more-questions/

 

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