Infectious Diseases
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Infectious Diseases
A curation of the best Articles and Research on Infectious Diseases. (Not a news site, focus on ideas, research, solutions, protocols and discussions related infectious/communicable/tropical diseases.
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Team finds 'footprint' of coronavirus outbreak from 20K years ago

Team finds 'footprint' of coronavirus outbreak from 20K years ago | Infectious Diseases | Scoop.it

A team of researchers analyzed the genomes of more than 2,500 modern humans from 26 worldwide populations, to better understand how humans have adapted to historical coronavirus outbreaks.

 

The team used computational methods to uncover genetic traces of adaptation to coronaviruses, the family of viruses responsible for three major outbreaks in the last 20 years, including the ongoing COVID-19 pandemic.

 

Traces of the outbreak are evident in the genetic makeup of people from that area, they’ve found.

 

A coronavirus epidemic broke out in the East Asia region more than 20,000 years ago, as per their findings.

 

The discovery of a coronavirus outbreak from 20,000 years ago is "like finding fossilized dinosaur footprints instead of finding fossilized bones directly.

 

The work shows that over the course of the epidemic, selection favored certain variants of human genes involved in the virus-cell interactions that could have led to a less severe disease. Studying the “tracks” left by ancient viruses can help researchers better understand how the genomes of different human populations adapted to viruses that have emerged as important drivers of human evolution.

 

The study’s authors say their research could help identify viruses that have caused epidemics in the distant past and may do so in the future. Studies like theirs help researchers compile a list of potentially dangerous viruses and then develop diagnostics, vaccines, and drugs for the event of their return.

 

read the paper at https://www.cell.com/current-biology/fulltext/S0960-9822(21)00794-6

 

 

more at https://www.futurity.org/coronavirus-epidemic-viruses-2597742/

 

nrip's insight:

The promise of evolutionary genetic analyses as a new tool in fighting the outbreaks of the future

nrip's curator insight, July 19, 2021 10:55 PM

The promise of evolutionary genetic analyses as a new tool in fighting the outbreaks of the future

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How SARS-CoV-2 first adapted in humans

How SARS-CoV-2 first adapted in humans | Infectious Diseases | Scoop.it

Viruses need entry proteins to penetrate the cells where they will replicate. The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) version is called the spike or S protein.

 

The S protein, also the target of the current vaccines, is quickly adapting to its new human hosts. It took its first major step in this direction early in 2020, when its amino acid 614 (of 1297) changed from an aspartic acid (D) to a glycine (G). Viruses bearing this D614G mutation transmit among humans more rapidly and now form the majority in circulation.

 

On page 525 of this issue, Zhang et al. (1) use careful structural analyses to reveal how D614G changed the S protein to accelerate the pandemic.

 

The work of Zhang et al. also reveals more about the natural history of the virus. The notable emergence of D614G suggests that the acquisition of a destabilizing furin site was a recent event. The virus could easily lose this site, as it does frequently in cell culture systems, implying that it in some way facilitates human transmission.

 

This is not a conclusion that most students of human coronaviruses would have anticipated, given that SARS-CoV-1, which transmits with reasonable efficiency, lacks this site, whereas the more distantly related MERS coronavirus bears this site and transmits poorly. How the SARS-CoV-2 furin site promotes new human infections remains a key open question in the field.

 

read the entire article at https://science.sciencemag.org/content/372/6541/466

 

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